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    transmembrane protein, putative (DUF1279) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816628, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1279)
    Primary source
    TAIR:AT2G20940
    Locus tag
    AT2G20940
    See related
    Araport:AT2G20940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26H11.30; F26H11_30
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9002001..9002908, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene chaperone (DUF3353) Neighboring gene uncharacterized protein Neighboring gene SNARE-like superfamily protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene phospholipase-like protein (PEARLI 4) family protein Neighboring gene lipid-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335716.1
    NM_127664.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1279)
    NP_565494.1
    • Protein of unknown function (DUF1279); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 228 Blast hits to 228 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 41; Plants - 76; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9002001..9002908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127664.3 → NP_565494.1  transmembrane protein, putative (DUF1279) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565494.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VV93, A0A384KKL9, A0A5S9WZS5, Q9SKR7
      Conserved Domains (1) summary
      pfam06916
      Location:3 → 114
      DUF1279; Protein of unknown function (DUF1279)

    2. NM_001335716.1 → NP_001324017.1  transmembrane protein, putative (DUF1279) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VV93, A0A384KKL9, A0A5S9WZS5, Q9SKR7
      Conserved Domains (1) summary
      pfam06916
      Location:3 → 114
      DUF1279; Protein of unknown function (DUF1279)
    Nucleotide Protein
    Heading Accession and Version

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