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    GCL2 GCR2-like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816606, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GCL2
    Official Full Name
    GCR2-like 2
    Primary source
    TAIR:AT2G20770
    Locus tag
    AT2G20770
    See related
    Araport:AT2G20770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5H14.26; F5H14_26; GCR2-like 2
    Summary
    Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
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    Genomic context

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    See GCL2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (8945243..8947310)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Tetraspanin family protein Neighboring gene expansin B1 Neighboring gene Clathrin light chain protein Neighboring gene Major facilitator superfamily protein Neighboring gene clathrin adaptor complexes medium subunit family protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)H dehydrogenase B4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic characterization reveals no role for the reported ABA receptor, GCR2, in ABA control of seed germination and early seedling development in Arabidopsis. Gao Y, et al. Plant J, 2007 Dec. PMID 17894782
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_179672.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in peptide modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extrinsic component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GCR2-like 2
    NP_850003.1
    • GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8945243..8947310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179672.4 → NP_850003.1  GCR2-like 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850003.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZQ6, Q9SKU0
      UniProtKB/TrEMBL
      A0A5S9X011
      Conserved Domains (1) summary
      cd04794
      Location:69 → 401
      euk_LANCL; Eukaryotic Lanthionine synthetase C-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZQ6.1

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