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    ZIGA4 ARF GAP-like zinc finger-containing protein ZIGA4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837390, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ZIGA4
    Official Full Name
    ARF GAP-like zinc finger-containing protein ZIGA4
    Primary source
    TAIR:AT1G08680
    Locus tag
    AT1G08680
    See related
    Araport:AT1G08680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGD14; ARF GAP-like zinc finger-containing protein ZIGA4; ARF-GAP domain 14; AT1G08690; F22O13.16; F22O13_16
    Summary
    A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15.
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    Genomic context

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    See ZIGA4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (2762584..2768967)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MALE GAMETOPHYTE DEFECTIVE 2 Neighboring gene ENTH/VHS family protein Neighboring gene SCR-like 3 Neighboring gene Presenilin-1 Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001035925.2
    NM_001331785.1
    NM_100741.4
    NM_180610.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARF GAP-like zinc finger-containing protein ZIGA4
    NP_001031002.1
    • ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001184942.1
    • ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2).
    NP_172344.2
    • ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3491 Blast hits to 2950 proteins in 241 species: Archae - 0; Bacteria - 7; Metazoa - 1485; Fungi - 538; Plants - 477; Viruses - 2; Other Eukaryotes - 982 (source: NCBI BLink).
    NP_850941.1
    • ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0; Bacteria - 4; Metazoa - 1486; Fungi - 545; Plants - 477; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2762584..2768967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198013.1 → NP_001184942.1  ARF GAP-like zinc finger-containing protein ZIGA4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184942.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TBD2, A0A654EIQ5, F4HXP0
      Conserved Domains (2) summary
      PLN03119
      Location:2 → 651
      PLN03119; putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
      pfam01412
      Location:12 → 126
      ArfGap; Putative GTPase activating protein for Arf

    2. NM_180610.4 → NP_850941.1  ARF GAP-like zinc finger-containing protein ZIGA4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850941.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YQ3, Q8RXE7, Q9FRR6, Q9FRR7, Q9FVH3
      UniProtKB/TrEMBL
      A0A5S9TBD2, A0A654EIQ5
      Conserved Domains (2) summary
      PLN03119
      Location:2 → 649
      PLN03119; putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
      pfam01412
      Location:12 → 126
      ArfGap; Putative GTPase activating protein for Arf

    3. NM_001331785.1 → NP_001320735.1  ARF GAP-like zinc finger-containing protein ZIGA4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANR5, A0A5S9TBD2, A0A654EIQ5

    4. NM_100741.4 → NP_172344.2  ARF GAP-like zinc finger-containing protein ZIGA4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172344.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TBD2, A0A654EIQ5
      Conserved Domains (2) summary
      PLN03119
      Location:2 → 648
      PLN03119; putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
      pfam01412
      Location:12 → 126
      ArfGap; Putative GTPase activating protein for Arf

    5. NM_001035925.2 → NP_001031002.1  ARF GAP-like zinc finger-containing protein ZIGA4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031002.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TBD2, A0A654EIQ5
      Conserved Domains (2) summary
      PLN03119
      Location:2 → 607
      PLN03119; putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
      pfam01412
      Location:12 → 126
      ArfGap; Putative GTPase activating protein for Arf
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RXE7.2

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