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    CEL5 cellulase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838893, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CEL5
    Official Full Name
    cellulase 5
    Primary source
    TAIR:AT1G22880
    Locus tag
    AT1G22880
    See related
    Araport:AT1G22880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA CELLULASE 5; ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4; ATCEL5; ATGH9B4; cellulase 5; F19G10.16; F19G10_16
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    Genomic context

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    See CEL5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8095449..8097790)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SNARE associated Golgi protein family Neighboring gene ncRNA Neighboring gene Vacuolar sorting protein 39 Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene Galactose-binding protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036005.2
    NM_001332565.1
    NM_102134.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    cellulase 5
    NP_001031082.1
    • cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_173701.1
    • cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 1763 Blast hits to 1753 proteins in 255 species: Archae - 2; Bacteria - 605; Metazoa - 186; Fungi - 17; Plants - 916; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8095449..8097790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036005.2 → NP_001031082.1  cellulase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031082.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VNE4, A0A654ED99
      Conserved Domains (1) summary
      cl02959
      Location:1 → 400
      Glyco_hydro_9; Glycosyl hydrolase family 9

    2. NM_102134.3 → NP_173701.1  cellulase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173701.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23134, Q2V4L8
      UniProtKB/TrEMBL
      A0A5S9VNE4, A0A654ED99
      Conserved Domains (2) summary
      PLN02175
      Location:1 → 484
      PLN02175; endoglucanase
      PLN02420
      Location:11 → 478
      PLN02420; endoglucanase

    3. NM_001332565.1 → NP_001321403.1  cellulase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQR5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2V4L8.2

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