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    SRC2 soybean gene regulated by cold-2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837428, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRC2
    Official Full Name
    soybean gene regulated by cold-2
    Primary source
    TAIR:AT1G09070
    Locus tag
    AT1G09070
    See related
    Araport:AT1G09070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    (AT)SRC2; AtSRC2; F7G19.6; F7G19_6; soybean gene regulated by cold-2; SOYBEAN GENE REGULATED BY COLD-2
    Summary
    SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.
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    Genomic context

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    See SRC2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (2927502..2929107)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene arginine-glutamic acid dipeptide repeat protein Neighboring gene arginine-glutamic acid dipeptide repeat protein Neighboring gene JmjC domain protein JMJ24 Neighboring gene Heat shock protein 70 (Hsp 70) family protein Neighboring gene respiratory burst oxidase-like protein Neighboring gene 26S proteasome AAA-ATPase subunit RPT5B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A low temperature-inducible protein AtSRC2 enhances the ROS-producing activity of NADPH oxidase AtRbohF. Kawarazaki T, et al. Biochim Biophys Acta, 2013 Dec. PMID 23872431
    2. Selective membrane protein internalization accompanies movement from the endoplasmic reticulum to the protein storage vacuole pathway in Arabidopsis. Oufattole M, et al. Plant Cell, 2005 Nov. PMID 16227454, Free PMC Article
    3. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    4. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    5. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtSRC2 is a novel activator of Ca(2+)-dependent AtRbohF-mediated reactive oxygen species production and may play a role in cold responses.
      Title: A low temperature-inducible protein AtSRC2 enhances the ROS-producing activity of NADPH oxidase AtRbohF.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_100778.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein targeting to vacuole TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in protein storage vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    soybean gene regulated by cold-2
    NP_563835.1
    • soybean gene regulated by cold-2 (SRC2); CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 25146 Blast hits to 15856 proteins in 1076 species: Archae - 6; Bacteria - 3010; Metazoa - 13770; Fungi - 3151; Plants - 2962; Viruses - 83; Other Eukaryotes - 2164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2927502..2929107
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100778.3 → NP_563835.1  soybean gene regulated by cold-2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563835.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04023, O81814
      UniProtKB/TrEMBL
      A0A178W5G5, A0A5S9TDV8
      Conserved Domains (3) summary
      cd04051
      Location:5 → 130
      C2_SRC2_like; C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins
      PRK10263
      Location:145 → 277
      PRK10263; DNA translocase FtsK; Provisional
      cl26593
      Location:213 → 269
      DUF2076; Uncharacterized protein conserved in bacteria (DUF2076)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04023.1

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