U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NF-YC9 nuclear factor Y, subunit C9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837417, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NF-YC9
    Official Full Name
    nuclear factor Y, subunit C9
    Primary source
    TAIR:AT1G08970
    Locus tag
    AT1G08970
    See related
    Araport:AT1G08970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; F7G19.16; F7G19_16; HAP5C; HEME ACTIVATED PROTEIN 5C; nuclear factor Y; subunit C9; subunit C9''
    Summary
    heme activated protein (HAP5c)
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NF-YC9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (2882491..2884342)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene cation exchanger 11 Neighboring gene amidase 1 Neighboring gene AP2/B3-like transcriptional factor family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Bi C, et al. Plant Mol Biol, 2017 Nov. PMID 28924726, Free PMC Article
    2. Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis. Li X, et al. Cell Rep, 2024 Mar 26. PMID 38386555
    3. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Liu X, et al. Plant Physiol, 2018 May. PMID 29599268, Free PMC Article
    4. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Tang Y, et al. Mol Plant, 2017 Feb 13. PMID 27876642
    5. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Liu X, et al. Nat Commun, 2016 Sep 14. PMID 27624486, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis.
      Title: Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis.
    2. A novel mechanism of the NF-YC9-mediated epigenetic regulation of FT protein activation in photoperiod-induced flowering.
      Title: Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
    3. NF-YC9 mediates abscisic acid (ABA) signaling via targeting to and aiding the ABA-responsive transcription factors such as ABI5.
      Title: Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_100768.4
    NM_179288.3
    NM_202067.2
    NM_202068.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gibberellic acid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear factor Y, subunit C9
    NP_172371.1
    • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 349; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
    NP_849619.1
    • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1345 Blast hits to 1345 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 351; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
    NP_973796.1
    • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973797.1
    • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2882491..2884342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179288.3 → NP_849619.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849619.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04033, Q8L4B2, Q9SNZ0
      UniProtKB/TrEMBL
      A0A178WIM6, A0A384LQG6, B9DFS3
      Conserved Domains (1) summary
      COG5208
      Location:62 → 213
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. NM_100768.4 → NP_172371.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172371.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04033, Q8L4B2, Q9SNZ0
      UniProtKB/TrEMBL
      A0A178WIM6, A0A384LQG6, B9DFS3
      Conserved Domains (1) summary
      COG5208
      Location:62 → 213
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    3. NM_202067.2 → NP_973796.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973796.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04033, Q8L4B2, Q9SNZ0
      UniProtKB/TrEMBL
      A0A178WIM6, A0A384LQG6, B9DFS3
      Conserved Domains (1) summary
      COG5208
      Location:62 → 213
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    4. NM_202068.2 → NP_973797.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973797.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04033, Q8L4B2, Q9SNZ0
      UniProtKB/TrEMBL
      A0A178WIM6, A0A384LQG6, B9DFS3
      Conserved Domains (1) summary
      COG5208
      Location:62 → 213
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L4B2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools