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    SDD1 Subtilase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839287, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDD1
    Official Full Name
    Subtilase family protein
    Primary source
    TAIR:AT1G04110
    Locus tag
    AT1G04110
    See related
    Araport:AT1G04110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSDD1; F20D22.12; F20D22_12; STOMATAL DENSITY AND DISTRIBUTION; STOMATAL DENSITY AND DISTRIBUTION 1
    Summary
    Initially identified as a mutation affecting stomatal development and distribution. Encodes a protein similar to serine proteases.
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    Genomic context

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    See SDD1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (1061297..1063809, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuolar sorting-associated protein (DUF946) Neighboring gene uncharacterized protein Neighboring gene indoleacetic acid-induced protein 10 Neighboring gene multidrug resistance-associated protein 5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The subtilisin-like serine protease SDD1 mediates cell-to-cell signaling during Arabidopsis stomatal development. Von Groll U, et al. Plant Cell, 2002 Jul. PMID 12119372, Free PMC Article
    2. A subtilisin-like serine protease involved in the regulation of stomatal density and distribution in Arabidopsis thaliana. Berger D, et al. Genes Dev, 2000 May 1. PMID 10809670, Free PMC Article
    3. Regulation of stomatal density by the GTL1 transcription factor for improving water use efficiency. Yoo CY, et al. Plant Signal Behav, 2011 Jul. PMID 21691149, Free PMC Article
    4. The Arabidopsis GTL1 transcription factor regulates water use efficiency and drought tolerance by modulating stomatal density via transrepression of SDD1. Yoo CY, et al. Plant Cell, 2010 Dec. PMID 21169508, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100292.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stomatal complex morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Subtilase family protein
    NP_563701.1
    • STOMATAL DENSITY AND DISTRIBUTION (SDD1); CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT2G05920.1); Has 8825 Blast hits to 7601 proteins in 1230 species: Archae - 300; Bacteria - 5187; Metazoa - 188; Fungi - 495; Plants - 1932; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1061297..1063809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100292.2 → NP_563701.1  Subtilase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563701.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64495
      UniProtKB/TrEMBL
      A0A178WPN6, A0A5S9SH88, A0A654E7W2
      Conserved Domains (5) summary
      cd04852
      Location:109 → 586
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      COG1404
      Location:489 → 648
      AprE; Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones]
      cd02120
      Location:354 → 481
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:27 → 112
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:667 → 770
      fn3_6; Fibronectin type-III domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64495.1

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