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    SKIP6 SKP1 interacting partner 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816731, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SKIP6
    Official Full Name
    SKP1 interacting partner 6
    Primary source
    TAIR:AT2G21950
    Locus tag
    AT2G21950
    See related
    Araport:AT2G21950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7D8.27; F7D8_27; SKP1 interacting partner 6
    Summary
    Encodes an SKP1 interacting partner (SKIP6).
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    Genomic context

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    See SKIP6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (9353174..9354645, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene shikimate kinase 1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene stress enhanced protein 2 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
    2. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127764.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1 interacting partner 6
    NP_565522.1
    • SKP1 interacting partner 6 (SKIP6); CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39550.1); Has 5633 Blast hits to 4259 proteins in 231 species: Archae - 10; Bacteria - 283; Metazoa - 3617; Fungi - 16; Plants - 1462; Viruses - 63; Other Eukaryotes - 182 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9353174..9354645 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127764.2 → NP_565522.1  SKP1 interacting partner 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565522.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FUZ9, Q9SJ04
      UniProtKB/TrEMBL
      A0A178W229, A0A5S9X080
      Conserved Domains (4) summary
      TIGR03547
      Location:153 → 352
      muta_rot_YjhT; mutatrotase, YjhT family
      sd00038
      Location:122 → 159
      Kelch; KELCH repeat [structural motif]
      pfam00646
      Location:21 → 64
      F-box; F-box domain
      pfam01344
      Location:117 → 160
      Kelch_1; Kelch motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJ04.1

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