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    TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818274, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TCP family transcription factor
    Primary source
    TAIR:AT2G37000
    Locus tag
    AT2G37000
    See related
    Araport:AT2G37000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1J8.18; T1J8_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (15540246..15541248)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DVL family protein Neighboring gene RNApolymerase sigma-subunit F Neighboring gene non-intrinsic ABC protein 12 Neighboring gene Translin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Giraud E, et al. Plant Cell, 2010 Dec. PMID 21183706, Free PMC Article
    2. Analysis of functional redundancies within the Arabidopsis TCP transcription factor family. Danisman S, et al. J Exp Bot, 2013 Dec. PMID 24129704, Free PMC Article
    3. SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis. Chen GH, et al. J Genet Genomics, 2014 Dec 20. PMID 25527103
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129256.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TCP family transcription factor
    NP_181237.1
    • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G58100.1); Has 346 Blast hits to 346 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15540246..15541248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129256.3 → NP_181237.1  TCP family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181237.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJK7
      UniProtKB/TrEMBL
      A0A178VXU1, A0A5S9X4P8, A0A654FA61
      Conserved Domains (1) summary
      cl23822
      Location:43 → 102
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJK7.1

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