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    XTH32 xyloglucan endotransglucosylase/hydrolase 32 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818259, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH32
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 32
    Primary source
    TAIR:AT2G36870
    Locus tag
    AT2G36870
    See related
    Araport:AT2G36870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtXTH32; T1J8.5; T1J8_5; xyloglucan endotransglucosylase/hydrolase 32
    Summary
    Encodes a xyloglucan endotransglycosylase/hydrolase.
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    Genomic context

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    See XTH32 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (15472607..15474828, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glucan synthase-like 8 Neighboring gene uncharacterized protein Neighboring gene tRNA-Tyr Neighboring gene methionine adenosyltransferase 3 Neighboring gene translation initiation factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Group III-A XTH genes of Arabidopsis encode predominant xyloglucan endohydrolases that are dispensable for normal growth. Kaewthai N, et al. Plant Physiol, 2013 Jan. PMID 23104861, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001336611.1
    NM_129242.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell wall macromolecule catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 32
    NP_001318367.1
    • xyloglucan endotransglucosylase/hydrolase 32 (XTH32); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endo-transglycosylase-related 8 (TAIR:AT3G44990.1).
    NP_181224.1
    • xyloglucan endotransglucosylase/hydrolase 32 (XTH32); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endo-transglycosylase-related 8 (TAIR:AT3G44990.1); Has 1823 Blast hits to 1808 proteins in 256 species: Archae - 2; Bacteria - 180; Metazoa - 0; Fungi - 226; Plants - 1360; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15472607..15474828 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129242.3 → NP_181224.1  xyloglucan endotransglucosylase/hydrolase 32 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181224.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJL9
      UniProtKB/TrEMBL
      A0A178VWG1, A0A5S9X4S6
      Conserved Domains (1) summary
      cl22861
      Location:39 → 297
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    2. NM_001336611.1 → NP_001318367.1  xyloglucan endotransglucosylase/hydrolase 32 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IP22
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJL9.1

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