U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816207, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT2G17033
    Locus tag
    AT2G17033
    See related
    Araport:AT2G17033
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (7401117..7403661)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene NAC domain containing protein 36

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An Arabidopsis pentatricopeptide repeat protein, SUPPRESSOR OF VARIEGATION7, is required for FtsH-mediated chloroplast biogenesis. Liu X, et al. Plant Physiol, 2010 Dec. PMID 20935174, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001335531.1
    NM_001335532.1
    NM_127257.3
    NM_179631.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_565402.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2021 Blast hits to 1571 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    NP_849962.1
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7401117..7403661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179631.2 → NP_849962.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849962.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPA0, Q8GWA9, Q94K83
      UniProtKB/TrEMBL
      A0A5S9WYL2, A0A654EYJ8
      Conserved Domains (3) summary
      smart00463
      Location:413 → 497
      SMR; Small MutS-related domain
      TIGR00756
      Location:246 → 277
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:246 → 273
      PPR; PPR repeat [structural motif]

    2. NM_127257.3 → NP_565402.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565402.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WYL2
      Conserved Domains (3) summary
      smart00463
      Location:412 → 496
      SMR; Small MutS-related domain
      TIGR00756
      Location:245 → 276
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:245 → 272
      PPR; PPR repeat [structural motif]

    3. NM_001335531.1 → NP_001324066.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WYL2

    4. NM_001335532.1 → NP_001324067.1  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VU55, A0A1P8AZ08
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWA9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.