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    Class I peptide chain release factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842585, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Class I peptide chain release factor
    Primary source
    TAIR:AT1G62850
    Locus tag
    AT1G62850
    See related
    Araport:AT1G62850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (23271703..23274340, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LSD1-like 1 Neighboring gene miscRNA Neighboring gene ankyrin repeat/KH domain protein (DUF1442) Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084291.2
    NM_001084292.1
    NM_001334053.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables translation release factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Class I peptide chain release factor
    NP_001077760.1
    • Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
    NP_001077761.1
    • Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23271703..23274340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084291.2 → NP_001077760.1  Class I peptide chain release factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077760.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3I9, Q84JF2
      Conserved Domains (1) summary
      PRK09256
      Location:96 → 234
      PRK09256; hypothetical protein; Provisional

    2. NM_001084292.1 → NP_001077761.1  Class I peptide chain release factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077761.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W3I9, Q84JF2
      Conserved Domains (1) summary
      PRK09256
      Location:96 → 234
      PRK09256; hypothetical protein; Provisional

    3. NM_001334053.1 → NP_001322473.1  Class I peptide chain release factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W537, A0A1P8AU33
    Nucleotide Protein
    Heading Accession and Version

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