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    Nucleoporin autopeptidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842256, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Nucleoporin autopeptidase
    Primary source
    TAIR:AT1G59660
    Locus tag
    AT1G59660
    See related
    Araport:AT1G59660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30E16.24; T30E16_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (21923986..21929437)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transcription factor BIG PETAL P (BPE) Neighboring gene CW14 protein (DUF1336) Neighboring gene glutathione S-transferase TAU 15 Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleoporin Nup98 participates in flowering regulation in a CONSTANS-independent mode. Jiang S, et al. Plant Cell Rep, 2019 Oct. PMID 31236659
    2. Nup98 FG domains from diverse species spontaneously phase-separate into particles with nuclear pore-like permselectivity. Schmidt HB, et al. Elife, 2015 Jan 6. PMID 25562883, Free PMC Article
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104659.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photoperiodism, flowering IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleoporin autopeptidase
    NP_176175.1
    • Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 64429 Blast hits to 28580 proteins in 1811 species: Archae - 118; Bacteria - 17184; Metazoa - 18465; Fungi - 12106; Plants - 2886; Viruses - 648; Other Eukaryotes - 13022 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21923986..21929437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333860.1 → NP_001320545.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN64, A0A5S9WQZ0

    2. NM_001333861.1 → NP_001320546.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN64, A0A5S9WQZ0

    3. NM_104659.3 → NP_176175.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ID16, Q9LQ50
      UniProtKB/TrEMBL
      A0A5S9WQZ0
      Conserved Domains (2) summary
      pfam04096
      Location:846 → 986
      Nucleoporin2; Nucleoporin autopeptidase
      pfam13634
      Location:46 → 143
      Nucleoporin_FG; Nucleoporin FG repeat region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4ID16.1

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