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    ARFA1F ADP-ribosylation factor A1F [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837606, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARFA1F
    Official Full Name
    ADP-ribosylation factor A1F
    Primary source
    TAIR:AT1G10630
    Locus tag
    AT1G10630
    See related
    Araport:AT1G10630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADP-ribosylation factor A1F; ATARFA1F; F20B24.7; F20B24_7
    Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
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    Genomic context

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    See ARFA1F in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (3512739..3514824, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene associated molecule with the SH3 domain of STAM 2 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Pectin lyase-like superfamily protein Neighboring gene SBP (S-ribonuclease binding protein) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes encoding ADP-ribosylation factors in Arabidopsis thaliana L. Heyn.; genome analysis and antisense suppression. Gebbie LK, et al. J Exp Bot, 2005 Apr. PMID 15723828
    2. Proteomic survey of copper-binding proteins in Arabidopsis roots by immobilized metal affinity chromatography and mass spectrometry. Kung CC, et al. Proteomics, 2006 May. PMID 16526091
    3. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
    4. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001331919.1
    NM_100939.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables GTP binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables copper ion binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phospholipase activator activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor A1F
    NP_172533.2
    • ADP-ribosylation factor A1F (ARFA1F); FUNCTIONS IN: phospholipase activator activity, GTP binding, copper ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1); Has 15022 Blast hits to 15003 proteins in 509 species: Archae - 14; Bacteria - 51; Metazoa - 7710; Fungi - 1942; Plants - 2027; Viruses - 3; Other Eukaryotes - 3275 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3512739..3514824 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100939.4 → NP_172533.2  ADP-ribosylation factor A1F [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172533.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4P5, A0A384LQJ7, A0A654G139, Q6ID97
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional

    2. NM_001331919.1 → NP_001321560.1  ADP-ribosylation factor A1F [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4P5, A0A384LQJ7, A0A654G139, Q6ID97
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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