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    methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841424, updated on 18-Sep-2024

    Summary

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    Official Full Name
    methyltransferase
    Primary source
    TAIR:AT1G50000
    Locus tag
    AT1G50000
    See related
    Araport:AT1G50000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J10.21; F2J10_21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (18515059..18517290, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene photosystem I reaction center subunit N Neighboring gene DNA/RNA polymerases superfamily protein Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene tubulin alpha-2 chain Neighboring gene tubulin alpha-6 chain Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036088.2
    NM_001333415.1
    NM_001333416.1
    NM_001333417.1
    NM_103888.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    methyltransferase
    NP_001031165.1
    • methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_175422.2
    • methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 5958 Blast hits to 5958 proteins in 2191 species: Archae - 0; Bacteria - 4231; Metazoa - 2; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1691 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18515059..18517290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103888.5 → NP_175422.2  methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175422.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W635, Q6E297
      Conserved Domains (1) summary
      pfam04452
      Location:70 → 286
      Methyltrans_RNA; RNA methyltransferase

    2. NM_001036088.2 → NP_001031165.1  methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031165.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6E295
      Conserved Domains (1) summary
      cl00611
      Location:70 → 210
      Methyltrans_RNA; RNA methyltransferase

    3. NM_001333415.1 → NP_001321338.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQL0

    4. NM_001333416.1 → NP_001321337.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQL1

    5. NM_001333417.1 → NP_001321336.1  methyltransferase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQT0
    Nucleotide Protein
    Heading Accession and Version

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