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    PUM22 pumilio 22 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837547, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM22
    Official Full Name
    pumilio 22
    Primary source
    TAIR:AT1G01410
    Locus tag
    AT1G01410
    See related
    Araport:AT1G01410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM22; F6F3.21; F6F3_21; pumilio 22
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM22 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (153113..154198)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene uncharacterized protein Neighboring gene UDP-glucosyl transferase 72B3 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 25

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    pumilio 22
    NP_171648.1
    • pumilio 22 (PUM22); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G64490.1); Has 304 Blast hits to 271 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 65; Plants - 186; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      153113..154198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100023.1 → NP_171648.1  pumilio 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171648.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LNI2
      UniProtKB/TrEMBL
      A0A178W4W5
      Conserved Domains (1) summary
      cl21719
      Location:32 → 344
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LNI2.1

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