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    SKIP16 SKP1/ASK-interacting protein 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837120, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SKIP16
    Official Full Name
    SKP1/ASK-interacting protein 16
    Primary source
    TAIR:AT1G06110
    Locus tag
    AT1G06110
    See related
    Araport:AT1G06110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKP1/ASK-interacting protein 16; T21E18.16; T21E18_16
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    Genomic context

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    See SKIP16 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (1853059..1855378, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Fatty acid desaturase family protein Neighboring gene Fatty acid desaturase family protein Neighboring gene Fatty acid desaturase family protein Neighboring gene glyoxalase 2-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Gagne JM, et al. Proc Natl Acad Sci U S A, 2002 Aug 20. PMID 12169662, Free PMC Article
    2. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
    3. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001331613.1
    NM_001331614.1
    NM_100492.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1/ASK-interacting protein 16
    NP_563759.1
    • SKP1/ASK-interacting protein 16 (SKIP16); CONTAINS InterPro DOMAIN/s: ApaG (InterPro:IPR007474); Has 2063 Blast hits to 2061 proteins in 779 species: Archae - 0; Bacteria - 1378; Metazoa - 194; Fungi - 63; Plants - 89; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1853059..1855378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100492.4 → NP_563759.1  SKP1/ASK-interacting protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563759.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LND7
      UniProtKB/TrEMBL
      A0A178WAL1, A0A654E888, A0A7G2DNR6
      Conserved Domains (2) summary
      pfam04379
      Location:311 → 409
      DUF525; ApaG domain
      cl01747
      Location:85 → 157
      SMI1_KNR4; SMI1 / KNR4 family (SUKH-1)

    2. NM_001331613.1 → NP_001320593.1  SKP1/ASK-interacting protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAL1, A0A1P8ANB4, A0A654E888

    3. NM_001331614.1 → NP_001320594.1  SKP1/ASK-interacting protein 16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AND2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LND7.1

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