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    ubiquitin interaction motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840956, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin interaction motif-containing protein
    Primary source
    TAIR:AT1G43690
    Locus tag
    AT1G43690
    See related
    Araport:AT1G43690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J6.5; F2J6_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (16478159..16482859)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nucleic acid-binding/zinc ion-binding protein Neighboring gene ncRNA Neighboring gene VIRE2-interacting protein 1 Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_103494.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables K48-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin interaction motif-containing protein
    NP_175034.1
    • ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16478159..16482859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103494.5 → NP_175034.1  ubiquitin interaction motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175034.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZX5, A0A5S9WM38, A0A654EFV6, A0A7G2E0N8, Q8VYV0
      Conserved Domains (1) summary
      pfam13898
      Location:115 → 417
      DUF4205; Domain of unknown function (DUF4205)
    Nucleotide Protein
    Heading Accession and Version

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