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    zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842042, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc ion binding protein
    Primary source
    TAIR:AT1G55915
    Locus tag
    AT1G55915
    See related
    Araport:AT1G55915
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20907477..20910911)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene zinc transporter 11 precursor Neighboring gene uncharacterized protein Neighboring gene serine acetyltransferase 2;1 Neighboring gene nuclear speckle splicing regulatory-like protein (DUF2040)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Protease WSS1A, the Endonuclease MUS81, and the Phosphodiesterase TDP1 Are Involved in Independent Pathways of DNA-protein Crosslink Repair in Plants. Enderle J, et al. Plant Cell, 2019 Apr. PMID 30760561, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333743.1
    NM_104469.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion binding protein
    NP_001319245.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35690.1); Has 560 Blast hits to 511 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 231; Plants - 86; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20907477..20910911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333744.1 → NP_001321636.1  zinc ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARI2, Q9LG20

    2. NM_001333745.1 → NP_001321635.1  zinc ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ARI2, Q9LG20

    3. NM_001333743.1 → NP_001319245.1  zinc ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EKB6, Q0WPG7

    4. NM_104469.4 → NP_564704.2  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564704.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EKB6, Q0WPG7
      Conserved Domains (2) summary
      sd00029
      Location:331 → 350
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam08325
      Location:11 → 207
      WLM; WLM domain
    Nucleotide Protein
    Heading Accession and Version

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