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    scorpion toxin-like knottin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818957, updated on 18-Sep-2024

    Summary

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    Official Full Name
    scorpion toxin-like knottin superfamily protein
    Primary source
    TAIR:AT2G43550
    Locus tag
    AT2G43550
    See related
    Araport:AT2G43550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1O24.29
    Summary
    Encodes a defensin-like (DEFL) family protein.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18073305..18073651)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Scorpion toxin-like knottin superfamily protein Neighboring gene uncharacterized protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene chitinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_129917.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sodium channel inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    scorpion toxin-like knottin superfamily protein
    NP_566002.2
    • Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: Scorpion toxin-like knottin superfamily protein (TAIR:AT2G43535.1); Has 147 Blast hits to 147 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18073305..18073651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129917.3 → NP_566002.2  scorpion toxin-like knottin superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IR70, O22869, Q6ZZS7, Q6ZZU1, Q8GWN0
      UniProtKB/TrEMBL
      A0A5S9X6Q4, A0A654FC62
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22869.1

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