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    PERK13 root hair specific 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843382, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PERK13
    Official Full Name
    root hair specific 10
    Primary source
    TAIR:AT1G70460
    Locus tag
    AT1G70460
    See related
    Araport:AT1G70460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPERK13; F24J13.3; F24J13_3; proline-rich extensin-like receptor kinase 13; RHS10; root hair specific 10
    Summary
    Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).
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    Genomic context

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    See PERK13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (26555705..26559322)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene OBP32pep, putative (DUF220) Neighboring gene Ras-related small GTP-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PERK13 modulates phosphate deficiency-induced root hair elongation in Arabidopsis. Xue C, et al. Plant Sci, 2021 Nov. PMID 34620427
    2. Cell wall-associated ROOT HAIR SPECIFIC 10, a proline-rich receptor-like kinase, is a negative modulator of Arabidopsis root hair growth. Hwang Y, et al. J Exp Bot, 2016 Mar. PMID 26884603, Free PMC Article
    3. PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana. Humphrey TV, et al. J Exp Bot, 2015 Jan. PMID 25262228, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RHS10 mediates cell wall-associated signals to maintain proper root hair length, at least in part by regulating RNA catabolism and reactive oxygen species accumulation.
      Title: Cell wall-associated ROOT HAIR SPECIFIC 10, a proline-rich receptor-like kinase, is a negative modulator of Arabidopsis root hair growth.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105714.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to nitrogen starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to iron ion starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    root hair specific 10
    NP_177203.1
    • root hair specific 10 (RHS10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: root hair, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G70450.1); Has 376121 Blast hits to 219094 proteins in 6322 species: Archae - 675; Bacteria - 71771; Metazoa - 140962; Fungi - 47170; Plants - 60341; Viruses - 7360; Other Eukaryotes - 47842 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26555705..26559322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105714.4 → NP_177203.1  root hair specific 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177203.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAL8
      UniProtKB/TrEMBL
      A0A178WB53, A0A5S9WTB7
      Conserved Domains (1) summary
      cd14066
      Location:359 → 627
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAL8.1

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