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    SNARE-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844389, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE-like superfamily protein
    Primary source
    TAIR:AT1G80500
    Locus tag
    AT1G80500
    See related
    Araport:AT1G80500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T21F11.17; T21F11_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (30270445..30272668)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene plastid transcriptionally active 17 Neighboring gene TOPLESS-related 1 Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene Sterile alpha motif (SAM) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106698.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    SNARE-like superfamily protein
    NP_178165.2
    • SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30270445..30272668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334990.1 → NP_001320643.1  SNARE-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMS0, A0A384LFM4, A0A5S9WW27, A0A654ESB3, F4HTY0
      Conserved Domains (1) summary
      cd14825
      Location:4 → 135
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2

    2. NM_106698.4 → NP_178165.2  SNARE-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178165.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMS0, A0A384LFM4, A0A5S9WW27, A0A654ESB3, F4HTY0
      Conserved Domains (1) summary
      cd14825
      Location:4 → 135
      TRAPPC2_sedlin; Trafficking protein particle complex subunit 2
    Nucleotide Protein
    Heading Accession and Version

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