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    ABCB13 P-glycoprotein 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839687, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCB13
    Official Full Name
    P-glycoprotein 13
    Primary source
    TAIR:AT1G27940
    Locus tag
    AT1G27940
    See related
    Araport:AT1G27940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP-binding cassette B13; F13K9.5; F13K9_5; P-glycoprotein 13; PGP13
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    Genomic context

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    See ABCB13 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (9733430..9738236, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene microtubule-associated protein 65-8 Neighboring gene glucuronoxylan 4-O-methyltransferase-like protein (DUF579) Neighboring gene glycosylphosphatidylinositol-anchored lipid protein transfer 1 Neighboring gene evolutionarily conserved C-terminal region 9 Neighboring gene nuclear transport factor 2B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-glycoprotein 13
    NP_174115.1
    • P-glycoprotein 13 (PGP13); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 14 (TAIR:AT1G28010.1); Has 859453 Blast hits to 396267 proteins in 4182 species: Archae - 14855; Bacteria - 669138; Metazoa - 18079; Fungi - 12603; Plants - 9342; Viruses - 61; Other Eukaryotes - 135375 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9733430..9738236 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102559.2 → NP_174115.1  P-glycoprotein 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174115.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C7F8
      UniProtKB/TrEMBL
      A0A178W4F4, A0A5S9W4V2, A0A654EP70
      Conserved Domains (1) summary
      PTZ00265
      Location:54 → 1241
      PTZ00265; multidrug resistance protein (mdr1); Provisional

    2. NM_001332792.1 → NP_001322427.1  P-glycoprotein 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATY7, A0A5S9W4V2, A0A654EP70
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7F8.1

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