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    PAB6 poly(A) binding protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820885, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PAB6
    Official Full Name
    poly(A) binding protein 6
    Primary source
    TAIR:AT3G16380
    Locus tag
    AT3G16380
    See related
    Araport:AT3G16380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    poly(A) binding protein 6; T2O4.4
    Summary
    polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.
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    Genomic context

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    See PAB6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (5558445..5561126, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene HPT phosphotransmitter 4 Neighboring gene ncRNA Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene nitrile specifier protein 3 Neighboring gene nitrile specifier protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation. Belostotsky DA. Genetics, 2003 Jan. PMID 12586718, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112509.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA metabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within translational initiation TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    poly(A) binding protein 6
    NP_188259.1
    • poly(A) binding protein 6 (PAB6); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 47895 Blast hits to 20906 proteins in 826 species: Archae - 26; Bacteria - 3385; Metazoa - 25529; Fungi - 5704; Plants - 8252; Viruses - 0; Other Eukaryotes - 4999 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5558445..5561126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112509.2 → NP_188259.1  poly(A) binding protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188259.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04319
      UniProtKB/TrEMBL
      A0A5S9XCQ0, A0A7G2EL81
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04319.1

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