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    SDP6 FAD-dependent oxidoreductase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820199, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDP6
    Official Full Name
    FAD-dependent oxidoreductase family protein
    Primary source
    TAIR:AT3G10370
    Locus tag
    AT3G10370
    See related
    Araport:AT3G10370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SUGAR-DEPENDENT 6
    Summary
    mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion.
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    Genomic context

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    See SDP6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (3216339..3219270)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phenylalanine ammonia-lyase 4 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene pumilio 4 Neighboring gene subunit of exocyst complex 8 Neighboring gene protein FLOWERING locus D-like protein Neighboring gene vacuolar acid trehalase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis. Quettier AL, et al. Plant Physiol, 2008 Sep. PMID 18599644, Free PMC Article
    2. Identification of a mitochondrial glycerol-3-phosphate dehydrogenase from Arabidopsis thaliana: evidence for a mitochondrial glycerol-3-phosphate shuttle in plants. Shen W, et al. FEBS Lett, 2003 Feb 11. PMID 12586344
    3. Glycerol-3-phosphate metabolism in wheat contributes to systemic acquired resistance against Puccinia striiformis f. sp. tritici. Yang Y, et al. PLoS One, 2013. PMID 24312351, Free PMC Article
    4. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase hypothesized to participate in a mitochondrial G3P shuttle by cooperating with the cytosolic NAD-dependent GPDH protein GPDHC1
      Title: SUGAR-DEPENDENT6 encodes a mitochondrial flavin adenine dinucleotide-dependent glycerol-3-p dehydrogenase, which is required for glycerol catabolism and post germinative seedling growth in Arabidopsis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111872.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycerol-3-phosphate dehydrogenase (quinone) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerol catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within glycerol catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within glycerol catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in glycerol-3-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within glycerophosphate shuttle IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within glycerophosphate shuttle TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAD-dependent oxidoreductase family protein
    NP_187648.1
    • SUGAR-DEPENDENT 6 (SDP6); FUNCTIONS IN: glycerol-3-phosphate dehydrogenase activity; INVOLVED IN: glycerophosphate shuttle, glycerol metabolic process, glycerol catabolic process; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076), FAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR000447); Has 7040 Blast hits to 7029 proteins in 1867 species: Archae - 83; Bacteria - 4925; Metazoa - 247; Fungi - 177; Plants - 55; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3216339..3219270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111872.6 → NP_187648.1  FAD-dependent oxidoreductase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187648.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SS48
      UniProtKB/TrEMBL
      A0A178VGW1, A0A5S9XAZ6
      Conserved Domains (1) summary
      PLN02464
      Location:1 → 629
      PLN02464; glycerol-3-phosphate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SS48.1

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