U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PUB9 plant U-box 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819924, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PUB9
    Official Full Name
    plant U-box 9
    Primary source
    TAIR:AT3G07360
    Locus tag
    AT3G07360
    See related
    Araport:AT3G07360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PLANT U-BOX 9; ATPUB9; plant U-box 9
    Summary
    Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PUB9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (2354640..2356884)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sulfate/thiosulfate import ATP-binding protein, putative (DUF506) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene carboxyl terminus of HSC70-interacting protein Neighboring gene glycosyltransferase family protein (DUF23)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The S-Domain Receptor Kinase Arabidopsis Receptor Kinase2 and the U Box/Armadillo Repeat-Containing E3 Ubiquitin Ligase9 Module Mediates Lateral Root Development under Phosphate Starvation in Arabidopsis. Deb S, et al. Plant Physiol, 2014 Aug. PMID 24965176, Free PMC Article
    2. Identification of Feronia-interacting proteins in Arabidopsis thaliana. Choi JH, et al. Genes Genomics, 2022 Dec. PMID 36053485
    3. A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Mudgil Y, et al. Plant Physiol, 2004 Jan. PMID 14657406, Free PMC Article
    4. Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis. Samuel MA, et al. Plant Physiol, 2008 Aug. PMID 18552232, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001035579.1
    NM_001337704.1
    NM_001337705.1
    NM_001337706.1
    NM_001337707.1
    NM_001337708.1
    NM_001337709.1
    NM_001337710.1
    NM_111615.4
    NM_180200.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transmembrane receptor protein serine/threonine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to abscisic acid stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plant U-box 9
    NP_001319492.1
    • plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566304.1
    • plant U-box 9 (PUB9); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 3234 Blast hits to 3002 proteins in 224 species: Archae - 0; Bacteria - 16; Metazoa - 312; Fungi - 206; Plants - 2395; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
    NP_850531.1
    • plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2354640..2356884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111615.4 → NP_566304.1  plant U-box 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566304.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SRT0
      UniProtKB/TrEMBL
      A0A178VJC7, A0A5S9X9Y5
      Conserved Domains (3) summary
      smart00504
      Location:77 → 140
      Ubox; Modified RING finger domain
      PLN03200
      Location:222 → 359
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:250 → 287
      ARM; armadillo repeat [structural motif]

    2. NM_001337706.1 → NP_001327372.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    3. NM_001337705.1 → NP_001319492.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    4. NM_001337707.1 → NP_001327375.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    5. NM_180200.1 → NP_850531.1  plant U-box 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850531.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    6. NM_001337708.1 → NP_001327373.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    7. NM_001337709.1 → NP_001327374.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    8. NM_001035579.1 → NP_001030656.1  plant U-box 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030656.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    9. NM_001337710.1 → NP_001327371.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]

    10. NM_001337704.1 → NP_001327376.1  plant U-box 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF62, A0A384L554, Q3EBB0
      Conserved Domains (2) summary
      PLN03200
      Location:87 → 224
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:115 → 152
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRT0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools