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    RGP3 reversibly glycosylated polypeptide 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820039, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RGP3
    Official Full Name
    reversibly glycosylated polypeptide 3
    Primary source
    TAIR:AT3G08900
    Locus tag
    AT3G08900
    See related
    Araport:AT3G08900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    reversibly glycosylated polypeptide 3; RGP
    Summary
    RGP3 is a UDP-arabinose mutase that catalyzes the interconversion between the pyranose and furanose forms of UDP-L-arabinose. It is a reversibly autoglycosylated protein. Fluorescently-tagged RGP3 is found in the cytosol and associated with Golgi-like particles when expressed in tobacco leaves. An RGP3-YFP fusion protein under the control a native promoter can be found in the endosperm of Arabidopsis embryos during the linear and bent cotyledon stages of development.
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    Genomic context

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    See RGP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (2708086..2709949, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plectin-like protein Neighboring gene miscRNA Neighboring gene hypothetical protein (Protein of unknown function, DUF538) Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene LMBR1-like membrane protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of AtRGP1. A reversibly autoglycosylated arabidopsis protein implicated in cell wall biosynthesis. Delgado IJ, et al. Plant Physiol, 1998 Apr. PMID 9536051, Free PMC Article
    2. The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis. Rautengarten C, et al. Plant Cell, 2011 Apr. PMID 21478444, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111724.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-arabinopyranose mutase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables intramolecular transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within UDP-L-arabinose metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in plant-type cell wall organization or biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    reversibly glycosylated polypeptide 3
    NP_187502.2
    • reversibly glycosylated polypeptide 3 (RGP3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: cellulose biosynthetic process, cellular cell wall organization; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, sepal, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 259 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2708086..2709949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111724.3 → NP_187502.2  reversibly glycosylated polypeptide 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187502.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22666, Q8GWR6, Q9SR90
      UniProtKB/TrEMBL
      A0A5S9XBF9, A0A654FFW8, W8Q6U1
      Conserved Domains (1) summary
      PLN03180
      Location:6 → 350
      PLN03180; reversibly glycosylated polypeptide; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22666.2

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