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    IGR motif protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819750, updated on 18-Sep-2024

    Summary

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    Official Full Name
    IGR motif protein
    Primary source
    TAIR:AT3G05810
    Locus tag
    AT3G05810
    See related
    Araport:AT3G05810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A16.10; F10A16_10
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1730966..1732656, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene invertase H Neighboring gene spindle pole body component-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001337611.1
    NM_111455.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IGR motif protein
    NP_566261.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26800.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1730966..1732656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111455.3 → NP_566261.1  IGR motif protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566261.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD9, A0A384KMC8, Q8LC40
      Conserved Domains (1) summary
      pfam09597
      Location:43 → 101
      IGR; IGR protein motif

    2. NM_001337611.1 → NP_001327733.1  IGR motif protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD9, A0A384KMC8, Q8LC40
      Conserved Domains (1) summary
      pfam09597
      Location:43 → 101
      IGR; IGR protein motif
    Nucleotide Protein
    Heading Accession and Version

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