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    alphavirus core family protein (DUF3411) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820010, updated on 18-Sep-2024

    Summary

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    Official Full Name
    alphavirus core family protein (DUF3411)
    Primary source
    TAIR:AT3G08630
    Locus tag
    AT3G08630
    See related
    Araport:AT3G08630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (2620713..2622220)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit Neighboring gene RNA-binding KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene alphavirus core family protein (DUF3411)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111697.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    alphavirus core family protein (DUF3411)
    NP_187475.1
    • Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3411) (TAIR:AT3G08640.1); Has 4366 Blast hits to 2077 proteins in 248 species: Archae - 0; Bacteria - 513; Metazoa - 2417; Fungi - 136; Plants - 874; Viruses - 19; Other Eukaryotes - 407 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2620713..2622220
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111697.3 → NP_187475.1  alphavirus core family protein (DUF3411) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187475.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WS36, Q9C9Z3
      UniProtKB/TrEMBL
      A0A178V8Q9, A0A5S9XAH4
      Conserved Domains (1) summary
      pfam11891
      Location:108 → 277
      RETICULATA-like; Protein RETICULATA-related
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9Z3.1

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