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    SCN1 Immunoglobulin E-set superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819979, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCN1
    Official Full Name
    Immunoglobulin E-set superfamily protein
    Primary source
    TAIR:AT3G07880
    Locus tag
    AT3G07880
    See related
    Araport:AT3G07880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SUPERCENTIPEDE1
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    Genomic context

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    See SCN1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2513925..2515983)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene O-fucosyltransferase family protein Neighboring gene reactive oxygen species modulator-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A RhoGDP dissociation inhibitor spatially regulates growth in root hair cells. Carol RJ, et al. Nature, 2005 Dec 15. PMID 16355224
    2. Localization of AtROP4 and AtROP6 and interaction with the guanine nucleotide dissociation inhibitor AtRhoGDI1 from Arabidopsis. Bischoff F, et al. Plant Mol Biol, 2000 Feb. PMID 10798620
    3. Genetic interactions during root hair morphogenesis in Arabidopsis. Parker JS, et al. Plant Cell, 2000 Oct. PMID 11041890, Free PMC Article
    4. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111667.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rho GDP-dissociation inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root epidermal cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Immunoglobulin E-set superfamily protein
    NP_187445.1
    • SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2513925..2515983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111667.4 → NP_187445.1  Immunoglobulin E-set superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187445.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SFC6
      UniProtKB/TrEMBL
      A0A178VK83, A0A384KJQ8, Q541X0
      Conserved Domains (1) summary
      pfam02115
      Location:53 → 236
      Rho_GDI; RHO protein GDP dissociation inhibitor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SFC6.1

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