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    PHD finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819993, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PHD finger family protein
    Primary source
    TAIR:AT3G08020
    Locus tag
    AT3G08020
    See related
    Araport:AT3G08020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (2557437..2561848, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 27 Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene RNA binding protein Neighboring gene DNA-directed RNA polymerase subunit beta (Protein of unknown function, DUF642) Neighboring gene MATE efflux family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111681.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PHD finger family protein
    NP_187459.2
    • PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1); Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0; Bacteria - 13; Metazoa - 2009; Fungi - 82; Plants - 239; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2557437..2561848 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111681.3 → NP_187459.2  PHD finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187459.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XAH0, Q0WKW1
      Conserved Domains (2) summary
      cd16448
      Location:148 → 201
      RING-H2; H2 subclass of RING (RING-H2) finger and its variants
      cl22851
      Location:203 → 245
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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