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    CNBT1 cyclic nucleotide-binding transporter 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821037, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CNBT1
    Official Full Name
    cyclic nucleotide-binding transporter 1
    Primary source
    TAIR:AT3G17700
    Locus tag
    AT3G17700
    See related
    Araport:AT3G17700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC20; CNGC20; cyclic nucleotide gated channel 20; cyclic nucleotide-binding transporter 1; CYCLIC NUCLEOTIDE-GATED CHANNEL 20
    Summary
    cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.
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    Genomic context

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    See CNBT1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (6048814..6052675)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene cyclic nucleotide gated channel 19 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salt-dependent regulation of a CNG channel subfamily in Arabidopsis. Kugler A, et al. BMC Plant Biol, 2009 Nov 27. PMID 19943938, Free PMC Article
    2. An IQ domain mediates the interaction with calmodulin in a plant cyclic nucleotide-gated channel. Fischer C, et al. Plant Cell Physiol, 2013 Apr. PMID 23385145, Free PMC Article
    3. Nematode-induced changes of transporter gene expression in Arabidopsis roots. Hammes UZ, et al. Mol Plant Microbe Interact, 2005 Dec. PMID 16478044
    4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338307.1
    NM_112651.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to nematode HEP PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclic nucleotide-binding transporter 1
    NP_566585.1
    • cyclic nucleotide-binding transporter 1 (CNBT1); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 19 (TAIR:AT3G17690.1); Has 2782 Blast hits to 2720 proteins in 214 species: Archae - 0; Bacteria - 20; Metazoa - 1493; Fungi - 0; Plants - 916; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6048814..6052675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112651.5 → NP_566585.1  cyclic nucleotide-binding transporter 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566585.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LD37
      UniProtKB/TrEMBL
      A0A178V7Y3, A0A5S9XD41
      Conserved Domains (2) summary
      cd00038
      Location:593 → 709
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      pfam00520
      Location:205 → 391
      Ion_trans; Ion transport protein

    2. NM_001338307.1 → NP_001326341.1  cyclic nucleotide-binding transporter 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNZ4, A0A7G2EJ29
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LD37.1

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