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    TFIIB zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822191, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TFIIB zinc-binding protein
    Primary source
    TAIR:AT3G25940
    Locus tag
    AT3G25940
    See related
    Araport:AT3G25940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9494626..9496092)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MAP kinase kinase kinase, putative (DUF1644) Neighboring gene ribosomal protein L15 Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene Pyruvate kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_113498.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TFIIB zinc-binding protein
    NP_566786.1
    • TFIIB zinc-binding protein; FUNCTIONS IN: transcription regulator activity, DNA binding, sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20065.1); Has 975 Blast hits to 975 proteins in 277 species: Archae - 178; Bacteria - 0; Metazoa - 339; Fungi - 204; Plants - 110; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9494626..9496092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113498.3 → NP_566786.1  TFIIB zinc-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566786.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA57, A0A384L1F2, Q9LU97
      Conserved Domains (2) summary
      COG1594
      Location:9 → 118
      RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
      cd10507
      Location:75 → 118
      Zn-ribbon_RPA12; C-terminal zinc ribbon domain of RPA12 subunit of RNA polymerase I
    Nucleotide Protein
    Heading Accession and Version

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