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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821725, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT3G21710
    Locus tag
    AT3G21710
    See related
    Araport:AT3G21710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    VASCULAR-RELATED UNKNOWN PROTEIN 1; VUP1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (7648316..7649894)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene isocitrate lyase Neighboring gene Dihydroneopterin aldolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling. Grienenberger E, et al. Plant Physiol, 2014 Apr. PMID 24567189, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These data suggest a conserved role for VUP1 in regulating secondary wall formation during vascular development by tissue- or cell-specific modulation of hormone signaling pathways.[VUP1]
      Title: Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling.
    Submit: New GeneRIF Correction

    General gene information

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    NM_113066.3
    NM_202621.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within xylem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_188808.2
    • unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974350.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7648316..7649894
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113066.3 → NP_188808.2  uncharacterized protein AT3G21710 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188808.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6D7

    2. NM_202621.3 → NP_974350.1  uncharacterized protein AT3G21710 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974350.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GRY6, Q9LSZ3
      UniProtKB/TrEMBL
      A0A7G2EMH2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSZ3.1

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