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    VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818814, updated on 18-Sep-2024

    Summary

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    Official Full Name
    VQ motif-containing protein
    Primary source
    TAIR:AT2G42140
    Locus tag
    AT2G42140
    See related
    Araport:AT2G42140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24P15.5; T24P15_5
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (17568677..17569669, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DNA polymerase delta small subunit Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene DNA-binding bromodomain-containing protein Neighboring gene ncRNA Neighboring gene zinc finger (ubiquitin-hydrolase) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis VQ motif-containing proteins VQ12 and VQ29 negatively modulate basal defense against Botrytis cinerea. Wang H, et al. Sci Rep, 2015 Sep 23. PMID 26394921, Free PMC Article
    2. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129777.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VQ motif-containing protein
    NP_181744.1
    • VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G58000.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17568677..17569669 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129777.4 → NP_181744.1  VQ motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48522
      UniProtKB/TrEMBL
      A0A178VLY8, A0A5S9X6C9
      Conserved Domains (1) summary
      pfam05678
      Location:38 → 65
      VQ; VQ motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48522.1

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