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    CYP77A5P cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821355, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYP77A5P
    Official Full Name
    cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene
    Primary source
    TAIR:AT3G18270
    Locus tag
    AT3G18270
    See related
    Araport:AT3G18270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''cytochrome P450; cytochrome P450; family 77; polypeptide 5 pseudogene; polypeptide 5 pseudogene''; subfamily A
    Summary
    a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.
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    Genomic context

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    See CYP77A5P in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (6261733..6264361)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein S24/S35 Neighboring gene Putative membrane lipoprotein Neighboring gene Reticulon family protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112711.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene
    NP_566605.1
    • ''cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene'' (CYP77A5P); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mandelate racemase/muconate lactonizing enzyme, N-terminal (InterPro:IPR013341), Mandelate racemase/muconate lactonizing enzyme (InterPro:IPR001354), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342); BEST Arabidopsis thaliana protein match is: magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (TAIR:AT1G68890.1); Has 7895 Blast hits to 7895 proteins in 1549 species: Archae - 251; Bacteria - 5761; Metazoa - 71; Fungi - 140; Plants - 48; Viruses - 0; Other Eukaryotes - 1624 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6261733..6264361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112711.4 → NP_566605.1  cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566605.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F8E2, Q94K39
      Conserved Domains (2) summary
      COG4948
      Location:50 → 400
      RspA; L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily [Cell wall/membrane/envelope biogenesis, General function prediction only]
      cd03319
      Location:50 → 375
      L-Ala-DL-Glu_epimerase; L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of ...
    Nucleotide Protein
    Heading Accession and Version

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