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    S-locus related protein SLR1, putative (S1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820374, updated on 18-Sep-2024

    Summary

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    Official Full Name
    S-locus related protein SLR1, putative (S1)
    Primary source
    TAIR:AT3G12000
    Locus tag
    AT3G12000
    See related
    Araport:AT3G12000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MEC18.8
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (3818046..3819642, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Jojoba acyl CoA reductase-related male sterility protein Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene C18orf8 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene transmembrane/coiled-coil protein (Protein of unknown function DUF106, transmembrane)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112034.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    S-locus related protein SLR1, putative (S1)
    NP_187807.1
    • S-locus related protein SLR1, putative (S1); FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 3015 Blast hits to 2919 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3014; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3818046..3819642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112034.3 → NP_187807.1  S-locus related protein SLR1, putative (S1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187807.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHL2, A0A384KCW1, Q41272, Q9LHM1
      Conserved Domains (3) summary
      pfam00954
      Location:223 → 335
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:86 → 191
      B_lectin; D-mannose binding lectin
      pfam08276
      Location:357 → 417
      PAN_2; PAN-like domain
    Nucleotide Protein
    Heading Accession and Version

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