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    TLR4 regulator/MIR-interacting MSAP protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840852, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TLR4 regulator/MIR-interacting MSAP protein
    Primary source
    TAIR:AT1G42480
    Locus tag
    AT1G42480
    See related
    Araport:AT1G42480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8D8.4; T8D8_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (15936156..15938974)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Patched family protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001123953.2
    NM_001160925.1
    NM_103436.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    TLR4 regulator/MIR-interacting MSAP protein
    NP_001117425.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001154397.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 152 Blast hits to 152 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_564481.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      15936156..15938974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103436.3 → NP_564481.1  TLR4 regulator/MIR-interacting MSAP protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564481.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EFS9, A6QR96, Q680L3, Q8L9W2
      Conserved Domains (1) summary
      pfam11938
      Location:24 → 157
      DUF3456; TLR4 regulator and MIR-interacting MSAP

    2. NM_001123953.2 → NP_001117425.1  TLR4 regulator/MIR-interacting MSAP protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117425.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H661
      Conserved Domains (1) summary
      pfam11938
      Location:24 → 107
      DUF3456; TLR4 regulator and MIR-interacting MSAP

    3. NM_001160925.1 → NP_001154397.1  TLR4 regulator/MIR-interacting MSAP protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I9G7
      Conserved Domains (1) summary
      pfam11938
      Location:24 → 157
      DUF3456; TLR4 regulator and MIR-interacting MSAP
    Nucleotide Protein
    Heading Accession and Version

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