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    BPM2 BTB-POZ and MATH domain 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819793, updated on 18-Sep-2024

    Summary

    Official Symbol
    BPM2
    Official Full Name
    BTB-POZ and MATH domain 2
    Primary source
    TAIR:AT3G06190
    Locus tag
    AT3G06190
    See related
    Araport:AT3G06190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPM2; BTB-POZ and MATH domain 2; BTB-POZ AND MATH DOMAIN 2; F28L1.13; F28L1_13
    Summary
    Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).
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    Genomic context

    See BPM2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (1874169..1876946, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene Ribosomal protein L34e superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene AP2/B3-like transcriptional factor family protein

    Interactions

    General gene information

    NM_001337638.1
    NM_001337639.1
    NM_001337640.1
    NM_111494.3
    NM_202507.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    BTB-POZ and MATH domain 2
    NP_566275.1
    • BTB-POZ and MATH domain 2 (BPM2); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 5905 Blast hits to 5761 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 4114; Fungi - 49; Plants - 1477; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).
    NP_974236.1
    • BTB-POZ and MATH domain 2 (BPM2); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1874169..1876946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111494.3 → NP_566275.1  BTB-POZ and MATH domain 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566275.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8J9
      UniProtKB/TrEMBL
      A0A178VH59, A0A5S9X9Y1, A0A654F686
      Conserved Domains (3) summary
      cd00121
      Location:33 → 166
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:188 → 308
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:308 → 371
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family
    2. NM_001337638.1 → NP_001326823.1  BTB-POZ and MATH domain 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQG0
    3. NM_001337639.1 → NP_001326822.1  BTB-POZ and MATH domain 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQF9
      Conserved Domains (2) summary
      cd00121
      Location:33 → 166
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl38908
      Location:188 → 257
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    4. NM_202507.1 → NP_974236.1  BTB-POZ and MATH domain 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974236.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JAT1
      Conserved Domains (3) summary
      smart00225
      Location:203 → 260
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd00121
      Location:33 → 166
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      pfam00651
      Location:192 → 260
      BTB; BTB/POZ domain
    5. NM_001337640.1 → NP_001326821.1  BTB-POZ and MATH domain 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VH59, A0A1I9LQF8
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