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    glyoxal oxidase-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838578, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glyoxal oxidase-related protein
    Primary source
    TAIR:AT1G19900
    Locus tag
    AT1G19900
    See related
    Araport:AT1G19900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F9.4; F6F9_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (6906899..6908805, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Regulator of chromosome condensation (RCC1) family protein Neighboring gene male-gamete-specific histone H3 Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene Pseudouridine synthase/archaeosine transglycosylase-like family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RUBY, a Putative Galactose Oxidase, Influences Pectin Properties and Promotes Cell-To-Cell Adhesion in the Seed Coat Epidermis of Arabidopsis. Šola K, et al. Plant Cell, 2019 Apr. PMID 30852555, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101845.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables galactose oxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell-cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mucilage extrusion from seed coat IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxal oxidase-related protein
    NP_173419.1
    • glyoxal oxidase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Galactose oxidase, beta-propeller (InterPro:IPR015916), Immunoglobulin E-set (InterPro:IPR014756), Glyoxal oxidase, N-terminal (InterPro:IPR009880), Domain of unknown function DUF1929 (InterPro:IPR015202); BEST Arabidopsis thaliana protein match is: glyoxal oxidase-related protein (TAIR:AT1G75620.1); Has 833 Blast hits to 830 proteins in 167 species: Archae - 0; Bacteria - 311; Metazoa - 0; Fungi - 239; Plants - 262; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6906899..6908805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101845.3 → NP_173419.1  glyoxal oxidase-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173419.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9J5, A0A7G2DRU6, Q93Z02
      Conserved Domains (2) summary
      pfam07250
      Location:45 → 287
      Glyoxal_oxid_N; Glyoxal oxidase N-terminus
      pfam09118
      Location:450 → 547
      DUF1929; Domain of unknown function (DUF1929)
    Nucleotide Protein
    Heading Accession and Version

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