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    IPT6 isopentenyltransferase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839127, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IPT6
    Official Full Name
    isopentenyltransferase 6
    Primary source
    TAIR:AT1G25410
    Locus tag
    AT1G25410
    See related
    Araport:AT1G25410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6; ATIPT6; F2J7.12; F2J7_12; isopentenyltransferase 6
    Summary
    AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds
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    Genomic context

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    See IPT6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (8914191..8915219, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Miyawaki K, et al. Proc Natl Acad Sci U S A, 2006 Oct 31. PMID 17062755, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102352.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP/ADP dimethylallyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytokinin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    isopentenyltransferase 6
    NP_173912.1
    • isopentenyltransferase 6 (IPT6); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 7248 Blast hits to 7187 proteins in 2504 species: Archae - 0; Bacteria - 4974; Metazoa - 135; Fungi - 135; Plants - 290; Viruses - 0; Other Eukaryotes - 1714 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8914191..8915219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102352.1 → NP_173912.1  isopentenyltransferase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173912.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C6L1
      UniProtKB/TrEMBL
      A0A178WEI0, A0A5S9VVN3
      Conserved Domains (1) summary
      PLN02165
      Location:1 → 342
      PLN02165; adenylate isopentenyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C6L1.1

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