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    Di-glucose binding protein with Leucine-rich repeat domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839144, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Di-glucose binding protein with Leucine-rich repeat domain-containing protein
    Primary source
    TAIR:AT1G25570
    Locus tag
    AT1G25570
    See related
    Araport:AT1G25570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J7.2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (8991708..8995617, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb-like transcription factor family protein Neighboring gene AP2/B3 transcription factor family protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene coiled-coil protein (DUF572)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A self-regulatory cell-wall-sensing module at cell edges controls plant growth. Elliott L, et al. Nat Plants, 2024 Mar. PMID 38454063, Free PMC Article
    2. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    3. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102368.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall modification IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cell leading edge IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell trailing edge IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endosome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    Di-glucose binding protein with Leucine-rich repeat domain-containing protein
    NP_564237.2
    • Di-glucose binding protein with Leucine-rich repeat domain; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 4 (TAIR:AT1G28340.1); Has 39900 Blast hits to 11672 proteins in 418 species: Archae - 2; Bacteria - 388; Metazoa - 87; Fungi - 9; Plants - 38059; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8991708..8995617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102368.4 → NP_564237.2  Di-glucose binding protein with Leucine-rich repeat domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564237.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W695, F4ICJ5
      Conserved Domains (2) summary
      PLN03150
      Location:32 → 580
      PLN03150; hypothetical protein; Provisional
      sd00033
      Location:471 → 493
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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