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    Plasma-membrane choline transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839136, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plasma-membrane choline transporter family protein
    Primary source
    TAIR:AT1G25500
    Locus tag
    AT1G25500
    See related
    Araport:AT1G25500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J7.7; F2J7_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (8955195..8958132, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aluminum activated malate transporter family protein Neighboring gene ARM repeat superfamily protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Uncharacterized protein family (UPF0016) Neighboring gene Transmembrane amino acid transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001123883.1
    NM_001332682.1
    NM_102361.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plasma-membrane choline transporter family protein
    NP_001117355.1
    • Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001319081.1
    • Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_173921.1
    • Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 973 Blast hits to 970 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 169; Plants - 182; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8955195..8958132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102361.3 → NP_173921.1  Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173921.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6H3, A0A654ECV4, Q9C6L9
      Conserved Domains (1) summary
      pfam04515
      Location:157 → 452
      Choline_transpo; Plasma-membrane choline transporter

    2. NM_001332682.1 → NP_001319081.1  Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4ICI7

    3. NM_001123883.1 → NP_001117355.1  Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117355.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DWM6, F4ICI6
      Conserved Domains (1) summary
      pfam04515
      Location:99 → 394
      Choline_transpo; Plasma-membrane choline transporter
    Nucleotide Protein
    Heading Accession and Version

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