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    PFT1 phytochrome and flowering time regulatory protein (PFT1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839141, updated on 18-Sep-2024

    Summary

    Official Symbol
    PFT1
    Official Full Name
    phytochrome and flowering time regulatory protein (PFT1)
    Primary source
    TAIR:AT1G25540
    Locus tag
    AT1G25540
    See related
    Araport:AT1G25540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2J7.4; F2J7_4; MED25; mediator 25; PHYTOCHROME AND FLOWERING TIME 1
    Summary
    Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. PFT1 promotes flowering in CO dependent and independent pathways and integrates several environmental stimuli, such as light quality and JA-dependent defenses. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.
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    Genomic context

    See PFT1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (8969065..8974815, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Uncharacterized protein family (UPF0016) Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene myb-like transcription factor family protein Neighboring gene AP2/B3 transcription factor family protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001084127.1
    NM_102365.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coactivator activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    phytochrome and flowering time regulatory protein (PFT1)
    NP_001077596.1
    • PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: in 8 processes; LOCATED IN: mediator complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419); Has 143907 Blast hits to 47238 proteins in 2114 species: Archae - 36; Bacteria - 15136; Metazoa - 49480; Fungi - 14034; Plants - 10447; Viruses - 822; Other Eukaryotes - 53952 (source: NCBI BLink).
    NP_173925.3
    • PHYTOCHROME AND FLOWERING TIME 1 (PFT1); CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419), von Willebrand factor, type A (InterPro:IPR002035); Has 144499 Blast hits to 47376 proteins in 2113 species: Archae - 36; Bacteria - 15041; Metazoa - 49547; Fungi - 14283; Plants - 10465; Viruses - 822; Other Eukaryotes - 54305 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8969065..8974815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102365.5NP_173925.3  phytochrome and flowering time regulatory protein (PFT1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173925.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ICJ2, Q7XYY2, Q9C6M3
      UniProtKB/TrEMBL
      A0A178WIC6
      Conserved Domains (2) summary
      pfam08430
      Location:404506
      Forkhead_N; Forkhead N-terminal region
      cl00057
      Location:8226
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    2. NM_001084127.1NP_001077596.1  phytochrome and flowering time regulatory protein (PFT1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077596.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WIC6
      Conserved Domains (1) summary
      cl00057
      Location:5117
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...