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    MGP4 Nucleotide-diphospho-sugar transferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828028, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MGP4
    Official Full Name
    Nucleotide-diphospho-sugar transferase family protein
    Primary source
    TAIR:AT4G01220
    Locus tag
    AT4G01220
    See related
    Araport:AT4G01220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2N1.35; F2N1_35; male gametophyte defective 4
    Summary
    Encodes MGP4 (MALE GAMETOPHYTE DEFECTIVE 4), a rhamnogalacturonan II xylosyltransferase important for growth of pollen tubes and roots.
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    Genomic context

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    See MGP4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (513053..515853, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene glycosyl transferase family 1 protein Neighboring gene Reticulon family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A putative Arabidopsis thaliana glycosyltransferase, At4g01220, which is closely related to three plant cell wall-specific xylosyltransferases, is differentially expressed spatially and temporally. Fangel JU, et al. Plant Sci, 2011 Mar. PMID 21421394
    2. Male gametophyte defective 4 encodes a rhamnogalacturonan II xylosyltransferase and is important for growth of pollen tubes and roots in Arabidopsis. Liu XL, et al. Plant J, 2011 Feb. PMID 21288267
    3. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MGP4 is important for the normal growth of pollen tubes and roots, and functions as a xylosyltransferase, participating in the biosynthesis of rhamnogalacturonan II.
      Title: Male gametophyte defective 4 encodes a rhamnogalacturonan II xylosyltransferase and is important for growth of pollen tubes and roots in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_116352.3
    NM_178948.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables xylosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within rhamnogalacturonan II biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in Golgi trans cisterna HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Nucleotide-diphospho-sugar transferase family protein
    NP_567211.1
    • Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 275 Blast hits to 271 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_849279.1
    • Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 332 Blast hits to 328 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      513053..515853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_178948.3 → NP_849279.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849279.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5HZ43, Q94K03, Q9M146
      UniProtKB/TrEMBL
      A0A178V0Q2, A0A5S9XP45, W8QNI2
      Conserved Domains (1) summary
      pfam03407
      Location:120 → 339
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase

    2. NM_116352.3 → NP_567211.1  Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567211.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0Q2, A0A5S9XP45
      Conserved Domains (1) summary
      pfam03407
      Location:120 → 288
      Nucleotid_trans; Nucleotide-diphospho-sugar transferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M146.1

    Gene LinkOut

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