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    oxidoreductase, 2OG-Fe(II) oxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828132, updated on 18-Sep-2024

    Summary

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    Official Full Name
    oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Primary source
    TAIR:AT4G02940
    Locus tag
    AT4G02940
    See related
    Araport:AT4G02940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4I9.18; T4I9_18
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (1306313..1311038)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene ncRNA Neighboring gene Ubiquitin family protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ALKBH10B Is an RNA N(6)-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition. Duan HC, et al. Plant Cell, 2017 Dec. PMID 29180595, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ALKBH10B is a demethylase that oxidatively reverses m(6)A methylation in mRNA in vitro and in vivo.[ALKBH10B]
      Title: ALKBH10B Is an RNA N(6)-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_116528.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA N6-methyladenosine dioxygenase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within oxidative RNA demethylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    oxidoreductase, 2OG-Fe(II) oxygenase family protein
    NP_192203.1
    • oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G48080.1); Has 217 Blast hits to 213 proteins in 52 species: Archae - 0; Bacteria - 14; Metazoa - 24; Fungi - 16; Plants - 131; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1306313..1311038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116528.6 → NP_192203.1  oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192203.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZT92
      UniProtKB/TrEMBL
      A0A178V1C0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZT92.1

    Gene LinkOut

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