ATPC1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ATPC1
Official Full Name: ATPase, F1 complex, gamma subunit protein
Primary source: TAIR:AT4G04640
Locus tag: AT4G04640
See related: Araport:AT4G04640
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T19J18.4; T19J18_4
Summary: One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase.
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Genomic context

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See ATPC1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 1

Sequence:: Chromosome: 4; NC_003075.7 (2350498..2352025, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The ATP Synthase gamma Subunit ATPC1 Regulates RNA Editing in Chloroplasts.
Title: The ATP Synthase γ Subunit ATPC1 Regulates RNA Editing in Chloroplasts.
ATPC1 builds up a proton motive force preventing production of reactive oxygen species in photosystem I.
Title: Chloroplastic ATP synthase builds up a proton motive force preventing production of reactive oxygen species in photosystem I.
modifying the Arabidopsis thaliana gamma subunit by mutating three highly conserved acidic amino acids, D211V, E212L, and E226L, resulted in a mutant, termed mothra, in which ATP synthase which lacked light-dark regulation
Title: Light- and metabolism-related regulation of the chloroplast ATP synthase has distinct mechanisms and functions.
In wild-type plants, only ATPC1 is involved in ATP synthesis in photosynthesis. It shows classical light-induced redox regulation.
Title: Thioredoxin-insensitive plastid ATP synthase that performs moonlighting functions.
A point mutation in atpC1 raises the redox potential of the Arabidopsis chloroplast ATP synthase gamma-subunit regulatory disulfide above the range of thioredoxin modulation
Title: A point mutation in atpC1 raises the redox potential of the Arabidopsis chloroplast ATP synthase gamma-subunit regulatory disulfide above the range of thioredoxin modulation.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_116702.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables enzyme regulator activity	TAS Traceable Author Statement more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables proton-transporting ATP synthase activity, rotational mechanism	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within ATP biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within photosynthetic electron transport in photosystem II	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within proton motive force-driven ATP synthesis	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast envelope	HDA more info	PubMed
located_in chloroplast thylakoid	HDA more info	PubMed
located_in chloroplast thylakoid membrane	HDA more info	PubMed
located_in cytosol	HDA more info	PubMed
part_of proton-transporting ATP synthase complex	TAS Traceable Author Statement more info	PubMed
located_in thylakoid	HDA more info	PubMed

General protein information

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Preferred Names: ATPase, F1 complex, gamma subunit protein

NP_567265.1

ATPC1; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: photosynthetic electron transport in photosystem II, ATP synthesis coupled proton transport, ATP biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT1G15700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

2350498..2352025 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116702.2 → NP_567265.1 ATPase, F1 complex, gamma subunit protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567265.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q01908

UniProtKB/TrEMBL

A0A178USQ7, A0A5S9XPW3, A0A7G2EV18

Conserved Domains (1) summary

TIGR01146
Location:51 → 371

ATPsyn_F1gamma; ATP synthase, F1 gamma subunit