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    Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828369, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat protein kinase family protein
    Primary source
    TAIR:AT4G22730
    Locus tag
    AT4G22730
    See related
    Araport:AT4G22730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12H17.120; T12H17_120
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (11941001..11943885)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 706, subfamily A, polypeptide 2 Neighboring gene Actin-like ATPase superfamily protein Neighboring gene ncRNA Neighboring gene glycine-rich protein Neighboring gene methyl-CPG-binding domain 1 Neighboring gene DHHC-type zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341558.1
    NM_118399.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat protein kinase family protein
    NP_194004.1
    • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G51560.1); Has 137585 Blast hits to 82845 proteins in 2335 species: Archae - 76; Bacteria - 8092; Metazoa - 33995; Fungi - 4579; Plants - 77671; Viruses - 189; Other Eukaryotes - 12983 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11941001..11943885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118399.4 → NP_194004.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194004.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XVT7, A0A654FS87, O49654
      Conserved Domains (4) summary
      PLN00113
      Location:80 → 621
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:74 → 93
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:25 → 65
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:421 → 680
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001341558.1 → NP_001328301.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US42, A0A1P8B4A0
    Nucleotide Protein
    Heading Accession and Version

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