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    Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828462, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
    Primary source
    TAIR:AT4G23620
    Locus tag
    AT4G23620
    See related
    Araport:AT4G23620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9D16.90; F9D16_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (12314583..12316725, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Tyrosine transaminase family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene ncRNA Neighboring gene VIRB2-interacting protein 1 Neighboring gene tRNA-Leu Neighboring gene Potassium transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203885.1
    NM_118493.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cobalt ion binding HDA PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
    NP_001190814.1
    • Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25, beta domain (InterPro:IPR020057), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G66860.1).
    NP_194093.1
    • Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L25, N-terminal (InterPro:IPR020055), Ribosomal protein L25 (InterPro:IPR001021), Ribosomal protein L25, beta domain (InterPro:IPR020057), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G66860.1); Has 3887 Blast hits to 3887 proteins in 1083 species: Archae - 0; Bacteria - 2293; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12314583..12316725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118493.4 → NP_194093.1  Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194093.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V4H4, A0A654FS33, Q9SUR4
      Conserved Domains (1) summary
      PRK05618
      Location:53 → 251
      PRK05618; 50S ribosomal protein L25/general stress protein Ctc; Reviewed

    2. NM_001203885.1 → NP_001190814.1  Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190814.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F0D8, F4JPA3
      Conserved Domains (3) summary
      cd00495
      Location:53 → 172
      Ribosomal_L25_TL5_CTC; Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain
      PRK05618
      Location:53 → 264
      PRK05618; 50S ribosomal protein L25/general stress protein Ctc; Reviewed
      pfam14693
      Location:179 → 260
      Ribosomal_TL5_C; Ribosomal protein TL5, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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