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    Galactose-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828495, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Galactose-binding protein
    Primary source
    TAIR:AT4G23950
    Locus tag
    AT4G23950
    See related
    Araport:AT4G23950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSUN5; SUN-domain protein 5; SUN5; T32A16.120; T32A16_120
    Summary
    Encodes a member of the mid-SUN subfamily of SUN-domain proteins. It is involved in early seed development and nuclear morphology.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (12442047..12444547)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene FtsH extracellular protease family Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene auxin response factor 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of two distinct subfamilies of SUN-domain proteins in Arabidopsis and their interactions with the novel KASH-domain protein AtTIK. Graumann K, et al. J Exp Bot, 2014 Dec. PMID 25217773
    2. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118527.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within nucleus organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    Galactose-binding protein
    NP_001190819.1
    • Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1).
    NP_194126.5
    • Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1); Has 867 Blast hits to 815 proteins in 241 species: Archae - 25; Bacteria - 79; Metazoa - 272; Fungi - 148; Plants - 95; Viruses - 1; Other Eukaryotes - 247 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12442047..12444547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203890.1 → NP_001190819.1  Galactose-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190819.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY7
      Conserved Domains (1) summary
      pfam07738
      Location:193 → 315
      Sad1_UNC; Sad1 / UNC-like C-terminal

    2. NM_118527.6 → NP_194126.5  Galactose-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194126.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JPE8, F4JPE9, O22992, Q9T0A9
      UniProtKB/TrEMBL
      A0A178UYY7
      Conserved Domains (1) summary
      pfam07738
      Location:193 → 317
      Sad1_UNC; Sad1 / UNC-like C-terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JPE9.1

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